Kal-L, who is the superman of earth-two (golden age) died in infinite crisis #7. He again appears as a black lantern but that doesn't count as a true appearance, at least according to me.
Earth-one Superman, (silver and bronze age) last appears in the convergence event, I don't know exactly which issue but probably in 'convergence: adventures of Superman' or 'convergence #8'.
New Earth superman (post crisis) last appears in action comics #976 and by the end of the issue he merges with the new 52 superman thus creating a superman with elements of both prime earth and new earth kal-el present in him.
Prime earth Superman (new 52) last appears in superman (2011) #52, the story ends with him dying by the end of the issue.
There are currently two supermen in prime earth (after death metal). Clark kent last appeared in action comics #1039 and his son Jon kent last appeared in superman: son of kal-el #8.