This section of the history takes place during Flashpoint, a massive crossover event set in an alternate timeline to the mainstream DCU. History was completely changed when Professor Zoom finally found a way to erase his nemesis the Flash without harming his own legacy.
In this universe Mary Batson never becomes Captain Marvel, instead she along with five other children who were caught on a subway car that took them to the Rock of Eternity, and The Wizard Shazam instead grants the power to six children each with a different aspect of the power of Captain Marvel. An Asian-American boy named Eugene Choi possesses the wisdom of Solomon, an overweight Latino boy named Pedro Peña possesses the strength of Hercules, Mary Batson possesses the stamina of Atlas, Freddy Freeman possesses the power of Zeus, Billy Batson possesses the courage of Achilles, and an African-American girl named Darla Dudley possesses the speed of Mercury. By saying the wizards name "Shazam" together, the six children possess the collective ability to turn into Captain Thunder, this timeline's version of Captain Marvel, who has a scarred face which he claims is due to Wonder Woman, who in this timeline is a villain.
Cyborg, the Flash, Batman, Enchantress and Element Woman meet with the group of children known as S.H.A.Z.A.M. and ask for their help. Billy is swayed to the heroes' cause after he uses his abilities to see what the timeline is supposed to be like while stabilizing the Flash's memories, as they were adjusting to the current timeline. Billy convinces Eugene and the other children to help. They come together and shout "Shazam" and they merge into Captain Thunder. The heroes and Captain Thunder travel to what is left of Europe to stop the war between the Atlantean and the Amazons. Captain Thunder fights with the Amazon leader Wonder Woman to a draw before being transformed back into the six children by Enchantress, who is revealed to be a traitor. Before the kids can reform Captain Thunder, Billy is stabbed by Penthesileia one of the Amazons killing the young boy.
- 5 Appearances of Mary Batson (Flashpoint Timeline)
- 2 Images featuring Mary Batson (Flashpoint Timeline)
- Quotations by or about Mary Batson (Flashpoint Timeline)
- Character Gallery: Mary Batson (Flashpoint Timeline)