Answer: No. It may be considered as such, but, if there is no clarification that might indicate that the events are not part of the current timeline, then it is the same universe and it might just be "editorial mistakes", known also as inconsistencies. Assuming stuff, would only end up confusing people, IRL too.
That's kind of how it worked in the Marvel Universe, isn't it? For example, when Count Nefaria turned up alive after being considered dead for so long, it turned out there were just mitigating circumstances behind the scenes we were not aware of.
So, is this more accurate?
Pre-Crisis Universe
Post-Crisis Universe/Post Zero Hour Universe
Post Infinite Crisis Universe/New Earth
Prime Earth